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There are several known issues/limitations with the current implementation of merged cells:
Thick border problem on merged cells
If formatted gets white border.
Problem with merged cell when scrolling
Merged cells and freeze pane
Merged cells, that are bigger than one Row and are combined whith hiderow, are changing there shape.
Copy/fill and merged cells
Moving cell reference onto merged cell
Format painter doesn't copy merge info
Merged cell is unmerged when shifting cells up in deletion
Showpict in merged cell cut off when exported to pdf
A merged cell causes "freeze" in Worksheet when moving down with shift key+down arrow. These issues cannot be easily fixed, i.e. require re-implementation of the merged cells subsystem which per se is a bigger effort. #16557